Selected research themes are summarized below. A complete publication list is available on my Google Scholar profile.

Clinical Language Models & LLM Evaluation

My work in this area focuses on clinical language modeling, clinical NLP evaluation, and understanding the limits of LLMs in healthcare settings.

ClinicalT5: A Generative Language Model for Clinical Text
EMNLP, 2022
Large Language Models Struggle in Token-Level Clinical Named Entity Recognition
AMIA Annual Symposium Proceedings, 2024/2025
Context Matching is not Reasoning When Performing Generalized Clinical Evaluation of Generative Language Models
npj Digital Medicine, 2025
Dynamic Few-Shot Prompting for Clinical Note Section Classification Using Lightweight, Open-Source Large Language Models
JAMIA, 2025
Clinical Document Metadata Extraction: A Scoping Review
arXiv, 2025
Wonder at Chemotimelines 2024: MedTimeline -- An End-to-End NLP System for Timeline Extraction from Clinical Narratives
ClinicalNLP Workshop, 2024
Knowledge-Infused Biomedical AI

This line of work studies how biomedical knowledge sources, ontologies, and structured medical concepts can improve clinical NLP and prediction models.

Parameter-Efficient Domain Knowledge Integration from Multiple Sources for Biomedical Pre-trained Language Models
EMNLP, 2021
Enhancing Clinical Relevance of Pretrained Language Models Through Integration of External Knowledge: Case Study on Cardiovascular Diagnosis from Electronic Health Records
JMIR AI, 2024
Learning Electronic Health Records Through Hyperbolic Embedding of Medical Ontologies
ACM BCB, 2019
Graph Learning for Healthcare

This work applies graph neural networks, knowledge graphs, and multi-view representation learning to patient outcome prediction and healthcare data modeling.

Predicting Patient Readmission Risk from Medical Text via Knowledge Graph Enhanced Multiview Graph Convolution
SIGIR, 2021
Exploiting Node Content for Multiview Graph Convolutional Network and Adversarial Regularization
COLING, 2020
Neuro-Symbolic AI

This research explores neuro-symbolic methods for entity linking, explainability, and structured reasoning over short text and clinical data.

LNN-EL: A Neuro-Symbolic Approach to Short-Text Entity Linking
ACL, 2021
Cross-Lingual Short-Text Entity Linking: Generating Features for Neuro-Symbolic Methods
Data Science with Human-in-the-Loop Workshop, 2022
Explainable Diagnosis Prediction Through Neuro-Symbolic Integration
AMIA Summits on Translational Science, 2025
Medical Informatics & Real-World Evidence

This work includes collaborations on clinical informatics, real-world data, cancer research, disease trajectories, and digital health evidence generation.

A Scoping Review of OMOP CDM Adoption for Cancer Research Using Real World Data
npj Digital Medicine, 2025
Understanding Cancer Survivorship Care Needs Using Amazon Reviews: Content Analysis, Algorithm Development, and Validation Study
JMIR Cancer, 2025
Discovering Signature Disease Trajectories in Pancreatic Cancer and Soft-Tissue Sarcoma from Longitudinal Patient Records
Journal of Biomedical Informatics, 2025
Investigating the Impact of Social Determinants of Health on Diagnostic Delays and Access to Antifibrotic Treatment in Idiopathic Pulmonary Fibrosis
AMIA Summits on Translational Science, 2025